Paumet Research

Contact

Name: Fabienne Paumet, PhD
Position: Professor, Department of Microbiology & Immunology
Organization: Sidney Kimmel Medical College

Jefferson Alumni Hall, 506 (Lab)
Jefferson Alumni Hall, 516H (Office)
Philadelphia, PA 19107

Research in our laboratory focuses on host-pathogen interactions. In particular, we study the pathogenesis of the human pathogen Chlamydia trachomatis (C. trachomatis), which is the most frequently reported bacterial sexually transmitted disease, and the leading cause of infectious blindness worldwide. Chlamydia is particularly difficult to study, in part, due to its intracellular lifestyle. While the immune system can naturally destroy non-intracellular bacteria, intracellular bacteria hide inside human cells to escape immune defenses. To achieve this, Chlamydia manipulates host cells to create an intracellular niche, the so-called inclusion, in which it can multiply. C. trachomatis constitutes an outstanding model to study host-pathogen interaction as it manipulates many cellular pathways to support its intracellular development. Among these pathways, C. trachomatis drastically reorganizes the cytoskeleton to provide scaffolding for its inclusion and to redirect host organelles towards its niche. This bacterium is also particularly attractive to study, as it induces homotypic fusion of its inclusions via bacterial proteins.

Our laboratory uses a multidisciplinary approach to understand molecular-level interactions between the host and the pathogen. We combine a variety of sophisticated biochemical and cellular functional assays to understand how chlamydial proteins interfere with their host partners. Additionally, we now have the resources to mutagenize C. trachomatis to create knockouts, knock-ins, and mutants. Ultimately, this strategy will open new avenues of research for other intracellular bacteria, including Salmonella and Mycobacterium, which also manipulate their host cells to their advantage.

Research Projects

Determine how C. trachomatis manipulates the host cytoskeleton during infection

Actin and microtubules are important cytoskeletal elements in eukaryotic cells. The cytoskeleton controls many cellular processes, including cell division and motility, as well as vesicle and organelle trafficking. Inside its host cell, C. trachomatis rearranges the cytoskeleton to promote its survival and enhance its pathogenicity. In particular, C. trachomatis induces the rearrangement of both actin and microtubules, which is vital for its entry, inclusion development, maintenance of the inclusion structure, and its exit from its host cell. In this context, our laboratory seeks to understand the bacterial molecular machinery that co-opts the host cytoskeleton and coordinates the reorganization of actin and microtubules. Notably, we found that the chlamydial protein CT813/InaC controls both MT stabilization and actin polymerization around the inclusion by co-opting host small GTPases. We now seek to 1) identify any additional inclusion proteins involved in these processes, 2) determine how such a molecular platform efficiently coordinates the formation of the different scaffolds, and 3) assess the impact of these inclusion proteins on C. trachomatis development and pathogenesis.

Characterize the molecular machinery that controls the homotypic fusion of the inclusion

As an obligate intracellular bacterium, C. trachomatis replicates in an intracellular inclusion. When several bacteria infect the same cell, each develops in its own inclusion. Ultimately, all these inclusions undergo homotypic fusion ~15 hours post-infection. This homotypic fusion event is critical for C. trachomatis pathogenicity as natural non-fusing Chlamydia mutants have replication defects, grow more slowly than their wild-type counterparts, and cause significantly milder symptoms in humans. Recent work in our laboratory has characterized the inclusion membrane protein IncA, which is essential for membrane fusion. Furthermore, we recently discovered that inclusions form inclusion contact sites (ICSs), where specific inclusion proteins and lipids cluster. In this project, we seek to 1) identify additional lipid and protein elements that concentrate in the ICSs, 2) determine the involvement of these ICS elements in homotypic fusion, and 3) reconstitute IncA-mediated fusion in vitro in order to characterize how the various regulatory elements influence this event. Finally, we will 4) assess the role of IncA-mediated fusion in an animal model and characterize its impact on disease development.